Your description is still unclear to me. What I am guessing what your issue is:
"I want to set the pitch bend source controller to something other than the standard pitch bend. When I set destinations to something other than pitch bend, the pitch bend controller still affects pitch. I don't want pitch to be affected."
... and if this is the case, you need to do what I suggested:
you can set the pitch bend range to 0 (for up and down) for that Part
Specifically:
1) Edit the Part you are interested in making the pitch bend stop affecting pitch. Make sure in the bottom-left the 2nd square reads "Common" and is highlighted in blue. If not, touch "Common"
2) Go to the menu (left-hand touch screen): "Part Settings" (left-most column of menu choices) -> "Pitch" (2nd column from left menu items)
3) You should see to the right of middle of the screen two options:
"Pitch Bend" with a down arrow and "Pitch Bend" with an up arrow.
Set both of these to +0, meaning disable pitch bend.
This is the only place to stop pitch bend from bending pitch - which is a default of the controller - and still allow pitch bend to be available for the Source/Destination control matrix.